Joint Mathematics Meetings AMS Special Session
Current as of Saturday, January 13, 2024 03:30:05
- Program
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- Deadlines
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- Timetable
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- Inquiries: meet@ams.org
2024 Joint Mathematics Meetings (JMM 2024)
- Moscone North/South, Moscone Center, San Francisco, CA
- January 3-6, 2024 (Wednesday - Saturday)
- Meeting #1192
Associate Secretary for the AMS Scientific Program:
Michelle Ann Manes, American Institute of Mathematics mmanes@secretariat.ams.org
AMS Special Session on Mathematical Modeling of Nucleic Acid Structures
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Friday January 5, 2024, 9:00 a.m.-12:00 p.m.
AMS Special Session on Mathematical Modeling of Nucleic Acid Structures, I
This special session on mathematical modeling of nucleic acid structures will gather a diverse and international group of researchers to share novel mathematical methods and computational tools used for modeling DNA structures and RNA folding and to discuss their applications in life sciences and medicine. With methods from topology, geometry and discrete mathematics, the session aims to advance our understanding of the mechanism of formation and the function of nucleic acid structures.
Room 157, The Moscone Center
Organizers:
Pengyu Liu, University of California, Davis penliu@ucdavis.edu
Van Pham, University of South Florida
Svetlana Poznanovic, Clemson University
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9:00 a.m.
Can geometric combinatorics improve RNA folding predictions?
Christine Heitsch*, Georgia Institute of Technology
Svetlana Poznanovic, Clemson University
(1192-92-32119) -
10:00 a.m.
Topological metrics of structural complexity in biopolymers
Eleni Panagiotou*, Arizona State University
(1192-57-28674) -
10:30 a.m.
Ropelengths of alternating knots
Yuanan Diao*, University of North Carolina Charlotte
(1192-57-29803) -
11:00 a.m.
Unknotting and invariants of trivalent spatial graphs
Kenneth Baker, University of Miami
Dorothy Buck, Duke University
Allison H Moore*, Virginia Commonwealth University
Danielle O'Donnol, Marymount University
Scott Taylor, Colby College
(1192-57-32495) -
11:30 a.m.
A dynamical approach to studying of the energy landscape of DNA trefoils with excess linking number
Abby Pekoske Fulton*, Wentworth Institute of Technology
(1192-92-32710)
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9:00 a.m.
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Saturday January 6, 2024, 9:00 a.m.-12:00 p.m.
AMS Special Session on Mathematical Modeling of Nucleic Acid Structures, II
This special session on mathematical modeling of nucleic acid structures will gather a diverse and international group of researchers to share novel mathematical methods and computational tools used for modeling DNA structures and RNA folding and to discuss their applications in life sciences and medicine. With methods from topology, geometry and discrete mathematics, the session aims to advance our understanding of the mechanism of formation and the function of nucleic acid structures.
Room 157, The Moscone Center
Organizers:
Pengyu Liu, University of California, Davis penliu@ucdavis.edu
Van Pham, University of South Florida
Svetlana Poznanovic, Clemson University
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9:00 a.m.
Mathematical model for DNA building blocks used in crystallographic nanaostructures
Natasha Jonoska*, University of South Florida
Van Pham, University of South Florida
Masahico Saito, University of South Florida
(1192-92-33234) -
10:00 a.m.
Spatial graphs confined to tube regions in the simple cubic lattice
Kai Ishihara, Yamaguchi University
Koya Shimokawa*, Ochanomizu University
(1192-57-28506) -
10:30 a.m.
CANCELLED Single-strand nicks and single-strand binding protein dramatically alter R-loop formation landscape
Ethan T Holleman*, UC Davis
(1192-92-31305) -
11:00 a.m.
CANCELLED Modeling the mechanics of transcription and its regulation via DNA supercoiling
Sumitabha Brahmachari*, Rice University
(1192-92-33263) -
11:30 a.m.
Unknotted 3D Tracing of DNA Strands for the Design of Toroidal Nanopolyhedra
Sonia Durr, Department of Biomedical Engineering, San Jose State University
Antti Elonen, Department of Computer Science, Aalto University
Seth Gonzalez, Department of Biomedical Engineering, San Jose State University
Hao Legaspi, Department of Biomedical Engineering, San Jose State University
Abdulmelik Mohammed*, San Jose State University
Han Nguyen, Department of Biomedical Engineering, San Jose State University
Johnny Nguyen, Department of Computer Science, San Jose State University
Dung Pham, Department of Biomedical Engineering, San Jose State University
Matthew Vu, Department of Biomedical Engineering, San Jose State University
(1192-92-30914)
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9:00 a.m.